PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g18130.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 116aa    MW: 13151.1 Da    PI: 10.4053
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g18130.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer83.32.8e-261471057
     ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                    lkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC CHRnFHR+++
  Vang11g18130.3  1 LKNHAAAMGGNATDGCGEFMPS-GEEGTIEALNCSACHCHRNFHRKKK 47
                    69*******************9.999********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152323.482146IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-13135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.7E-23147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-26146IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.609.1E-3139108IPR009057Homeodomain-like
SuperFamilySSF466896.03E-2041107IPR009057Homeodomain-like
PROSITE profilePS500718.53544108IPR001356Homeobox domain
TIGRFAMsTIGR015653.0E-2846102IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
LKNHAAAMGG NATDGCGEFM PSGEEGTIEA LNCSACHCHR NFHRKKKRFR TKFTQEQKEK  60
MLNFAERVGW KIQKQEESVV QQFCQEIGVK RRVLKVWMHN NKHNLAKKNP PTAAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-25461041775ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-116AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015940519.16e-53PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotO647225e-36ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLM0TB322e-63M0TB32_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P28870_0015e-63(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.13e-29homeobox protein 21